pygpcca.GPCCA.macrostate_assignment

property GPCCA.macrostate_assignment: ndarray | None

Crisp clustering using G-PCCA.

This is recommended only for visualization purposes. You cannot compute any actual quantity of the coarse-grained kinetics without employing the fuzzy memberships!

Returns:

Integer vector of shape (n,) containing the macrostate each microstate is located in.

References

The code and docstring of this property origins (with some adjustments) from MSMTools, Copyright (c) 2015, 2014 Computational Molecular Biology Group, Freie Universitaet Berlin (GER).